#! /usr/bin/awk -f # #removes from a brk file disorder conformations, converts A to space and deletes B # { line_pdb = $0 if (substr($0,17,1) == "B" ) { getline line_pdb = $0 } else { if (substr($0,17,1) == "A" ) { line1 = substr($0,1,16) line3 = substr($0,18,55) print line1,line3 } else { printf "%s\n",line_pdb } } } #